Technická dokumentace

Struktura a nástroje

Co se děje

Na vstupu je
- online data Státní pokladny (pro část o veřejných výdajích)
- online excelová tabulka projektů od MMR - pro validaci
- sestavy projektů od MMR - pro validaci
- data ze studie z roku 2017
Na výstupu je
- několik exportních souborů (excel, CSV, parquet)
- webová dokumentace
- codebook
- studie v Rmarkdown
Mezi tím je spousta kroků v tidyverse, které všechna data propojují.

Jak se to děje

Celý pipeline je organizován nástrojem {targets}, funguje podobně jako make. Ve skriptu _targets.R jsou popsány všechny výstupy (“targets”) a jejich vztahy. {targets} sleduje, které targets neodpovídají aktuálnímu stavu kódu (funkce ve skriptech v R/) a jeho vstupů a po spuštění pipeline (tar_make()) spouští pouze ten kód, který je potřeba pro uvedení výstupů do aktuální podoby. Mezi výstupy patří průběžné datasety, výstupní datové soubory i výstupní datovádokumentace.

Všechny cesty ke vstupním a výstupním souborům a dalším parametry se nastavují v config.yml.

O reprodukovatelnost prostředí (tj. udržování správné verze balíků R) se stará systém {renv}.

Dokumentaci a validaci dat zajišťují postupy s využitím balíku {pointblank}

Dokumentace se generuje ze vstupních Rmarkdown souborů do adresáře /docs, který se po push na github automaticky publikuje.

Jak to znovu pustit

pustit renv::restore() - tím se do projektu načtou správné verze Rkových balíků
vložit aktualizované vstupní sestavy do data-input/sestavy [datum]
Zanést cestu do patřičného parametru v config.yml
Zopakovat s daty PRV v data-input/prv
Analogicky lze aktualizovat i excelové soubory
V config.yml aktualizovat cestu k veřejnému seznamu operací na webu dotaceeu.cz
Pustit targets::tar_make(), popř. spustit skript build.R nebo použít tlačítko Build na záložce Build.

Dokumentace pro reprodukovatelnost

Konfigurace

"./config.yml"


default:

  # settings for MISRIS (central budget starting from 2015)
  sp_years_central_new: !expr 2015:2020 # which years to download
  sp_months_central_new: 12 # which month's data to download
  sp_central_arrowdir_new: "data-processed/sp-central-new-arr"

  sp_nastroj_ids_1420_ops: ["102", "103", "104", "105", "106", "107", "108", "109"]
  sp_nastroj_ids_1420_prv: ["130", "187"]

  sp_nastroj_ids_0713_ops: ["30", "31", "33", "36", "37", "38", "39", "40", "51", "52", "53", "54"]
  sp_nastroj_ids_0713_prv: ["27", "87"]

  # settings for FINU (central budget 2010-2014)
  sp_years_central_old: !expr 2010:2014
  sp_months_central_old: 12
  sp_central_arrowdir_old: "data-processed/sp-central-old-arr"

  # settings for FINM (local budget 2010-2014)
  sp_years_local: !expr 2010:2020
  sp_months_local: 12
  sp_local_arrowdir: "data-processed/sp-local-arr"
  sp_local_grants_arrowdir: "data-processed/sp-local-grants-arr"

  # settings for FINSF (state funds 2015-)
  sp_months_sf: 12
  sp_sf_arrowdir: "data-processed/sp-sf-arr"

  # URL for getting project data
  ef_pubxls_url: "https://dotaceeu.cz/getmedia/6297d56b-0b57-418d-ad25-dd16bd687479/2021_06-Seznam-operaci-_-List-of-operations.xls.aspx?ext=.xls"

  # sestavy from MS
  sest_dir: "data-input/sestavy 20210528"
  sest_xlsx_prj: "E001 Identifikace projektu.xlsx"
  sest_xlsx_fin: "E003 Finance celkem.xlsx"
  sest_xlsx_zop: "E004 Žádosti o platbu.xlsx"
  sest_xlsx_obl: "E005 Kategorizace_oblast.xlsx"

  # PRV data-input

  prv_data_path: "data-input/prv/PRV 2014-20 k XII. 2020.XLSX"

  # Quest/Hermin categorisations
  mc_xlsx_q: "data-input/kategorizace/kategorie_questNEW-2.xlsx"
  mc_xlsx_h: "data-input/kategorizace/AIS_desagregace_rHERMIN.xlsx"
  mc_xlsx_prv: "data-input/kategorizace/Navrh - KATEGORIZACE - Operace PRV + priority.xlsx"

  # Arrow directory of cleaned up geolocation data for projects
  ef_obce_arrowdir: "data-input/esif-projekty-obce"

  # Excel file with hierarchy of all objectives and categories
  hier_excel_path: "data-input/matice/Hierarchie_uprava_CSR_NPR-O27-uprava_20210125.xlsx"
  hier_excel_sheet: SC

  # IDs
  czso_pop_table_id: "130149"

  # export location

  export_dir: "data-export"
  export_sum_xlsx: "esif_sr.xlsx"
  export_sum_csv: "esif_sr.csv"
  export_sum_pq: "esif_sr.parquet"
  export_detail_pq: "esif_sr_detail.parquet"

  export_cdbk: "codebook.yaml"

  repo_remote: "https://github.com/petrbouchal/esifinancuji"
  docs_url: "https://esifinancuji.petrbouchal.xyz"

  # data from 2017 study
  first_report_xlsx: "data-input/adic2017/vydaje_dataset.xlsx"

Prostředí

R

sessionInfo()


R version 4.1.2 (2021-11-01)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.3

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
 [1] visNetwork_2.0.9          shinyWidgets_0.5.7       
 [3] shinybusy_0.2.2           shiny_1.7.1              
 [5] rstudioapi_0.13           pingr_2.0.1              
 [7] markdown_1.1              clustermq_0.8.95.1       
 [9] bs4Dash_2.0.2             patchwork_1.1.1          
[11] gt_0.3.1                  ggplot2_3.3.3            
[13] forcats_0.5.0             details_0.2.1            
[15] pointblank_0.9.0          purrr_0.3.4              
[17] readr_2.0.2               writexl_1.4.0            
[19] lubridate_1.7.10          czso_0.3.5               
[21] ragg_1.1.0                tidyr_1.1.3              
[23] arrow_7.0.0               purrrow_0.0.0.9000       
[25] config_0.3.1              httr_1.4.2               
[27] curl_4.3                  janitor_2.0.1            
[29] readxl_1.3.1              here_1.0.1               
[31] statnipokladna_0.7.0.9000 bslib_0.3.1.9000         
[33] stringr_1.4.0             dplyr_1.0.7              
[35] magrittr_2.0.1            future_1.21.0            
[37] tarchetypes_0.4.1         targets_0.6.0.9000       

loaded via a namespace (and not attached):
 [1] colorspace_2.0-0  ellipsis_0.3.2    rprojroot_2.0.2   snakecase_0.11.0 
 [5] fs_1.5.0          farver_2.1.0      listenv_0.8.0     ggrepel_0.9.1    
 [9] bit64_4.0.5       fansi_0.5.0       xml2_1.3.2        codetools_0.2-18 
[13] extrafont_0.17    cachem_1.0.4      knitr_1.36        jsonlite_1.7.2   
[17] broom_0.7.3       Rttf2pt1_1.3.8    png_0.1-7         clipr_0.7.1      
[21] compiler_4.1.2    backports_1.2.1   assertthat_0.2.1  fastmap_1.1.0    
[25] cli_3.0.1         later_1.1.0.1     hrbrthemes_0.8.0  htmltools_0.5.2  
[29] tools_4.1.2       igraph_1.2.6      gtable_0.3.0      glue_1.4.2       
[33] Rcpp_1.0.8        cellranger_1.1.0  jquerylib_0.1.4   vctrs_0.3.8      
[37] extrafontdb_1.0   blastula_0.3.2    xfun_0.24         globals_0.14.0   
[41] ps_1.6.0          mime_0.10         lifecycle_1.0.0   renv_0.14.0      
[45] ptrr_0.2.0.9000   scales_1.1.1      hms_1.0.0         promises_1.2.0.1 
[49] parallel_4.1.2    yaml_2.2.1        gdtools_0.2.3     sass_0.4.0       
[53] stringi_1.5.3     highr_0.8         desc_1.4.0        checkmate_2.0.0  
[57] commonmark_1.7    rlang_0.4.11      pkgconfig_2.0.3   systemfonts_1.0.4
[61] evaluate_0.14     labeling_0.4.2    htmlwidgets_1.5.3 bit_4.0.4        
[65] processx_3.5.2    tidyselect_1.1.1  parallelly_1.23.0 bookdown_0.24    
[69] R6_2.5.0          generics_0.1.0    DBI_1.1.0         pillar_1.6.2     
[73] withr_2.4.2       tibble_3.1.3      crayon_1.4.2      utf8_1.2.2       
[77] tzdb_0.1.2        rmarkdown_2.11    usethis_2.1.5     grid_4.1.2       
[81] data.table_1.14.0 callr_3.7.0.9000  digest_0.6.27     xtable_1.8-4     
[85] httpuv_1.5.5      textshaping_0.3.6 munsell_0.5.0

Obsah renv.lock

"./renv.lock"


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      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "947e4e02a79effa5d512473e10f41797"
    },
    "statnipokladna": {
      "Package": "statnipokladna",
      "Version": "0.7.0.9000",
      "Source": "GitHub",
      "RemoteType": "github",
      "RemoteHost": "api.github.com",
      "RemoteUsername": "petrbouchal",
      "RemoteRepo": "statnipokladna",
      "RemoteRef": "master",
      "RemoteSha": "3f994b24f908b723bc9238096d44bf785143c72e",
      "Hash": "dd380b1572a7f5ac987e69840675dc09"
    },
    "stringi": {
      "Package": "stringi",
      "Version": "1.5.3",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "a063ebea753c92910a4cca7b18bc1f05"
    },
    "stringr": {
      "Package": "stringr",
      "Version": "1.4.0",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "0759e6b6c0957edb1311028a49a35e76"
    },
    "sys": {
      "Package": "sys",
      "Version": "3.4",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "b227d13e29222b4574486cfcbde077fa"
    },
    "systemfonts": {
      "Package": "systemfonts",
      "Version": "1.0.4",
      "Source": "Repository"
    },
    "tarchetypes": {
      "Package": "tarchetypes",
      "Version": "0.4.1",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "24c9eb58a70cef665befbcc9891572de"
    },
    "targets": {
      "Package": "targets",
      "Version": "0.6.0.9000",
      "Source": "GitHub",
      "RemoteType": "github",
      "RemoteHost": "api.github.com",
      "RemoteUsername": "ropensci",
      "RemoteRepo": "targets",
      "RemoteRef": "main",
      "RemoteSha": "df00a1cd82afda1d4c620f37e6c2b139c197149d",
      "Hash": "3584b9c28010e5f143fc8a758aebc0fd"
    },
    "testthat": {
      "Package": "testthat",
      "Version": "3.0.2",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "495e0434d9305716b6a87031570ce109"
    },
    "textshaping": {
      "Package": "textshaping",
      "Version": "0.3.6",
      "Source": "Repository"
    },
    "tibble": {
      "Package": "tibble",
      "Version": "3.1.3",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "038455513fde65e79c25e724e0c84ca2"
    },
    "tidyr": {
      "Package": "tidyr",
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      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "450d7dfaedde58e28586b854eeece4fa"
    },
    "tidyselect": {
      "Package": "tidyselect",
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      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "7243004a708d06d4716717fa1ff5b2fe"
    },
    "tidyverse": {
      "Package": "tidyverse",
      "Version": "1.3.0",
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      "Repository": "CRAN",
      "Hash": "bd51be662f359fa99021f3d51e911490"
    },
    "tinytex": {
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      "Repository": "CRAN",
      "Hash": "db9a6f2cf147751322d22c9f6647c7bd"
    },
    "tzdb": {
      "Package": "tzdb",
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      "Hash": "fb2b801053decce71295bb8cb04d438b"
    },
    "utf8": {
      "Package": "utf8",
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      "Source": "Repository",
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      "Hash": "c9c462b759a5cc844ae25b5942654d13"
    },
    "uuid": {
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      "Hash": "e4169eb989a5d03ccb6b628cad1b1b50"
    },
    "vctrs": {
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      "Repository": "CRAN",
      "Hash": "ecf749a1b39ea72bd9b51b76292261f1"
    },
    "viridisLite": {
      "Package": "viridisLite",
      "Version": "0.3.0",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "ce4f6271baa94776db692f1cb2055bee"
    },
    "visNetwork": {
      "Package": "visNetwork",
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      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "12545f2acf49d1d346d075580122d89c"
    },
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      "Hash": "9c3b3a3f947c7936cea7485349247e5b"
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      "Repository": "CRAN",
      "Hash": "30b15e2b6a0abc1e67bb468d9d851071"
    },
    "waldo": {
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      "Repository": "CRAN",
      "Hash": "20c45f1d511a3f730b7b469f4d11e104"
    },
    "whisker": {
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      "Repository": "CRAN",
      "Hash": "ca970b96d894e90397ed20637a0c1bbe"
    },
    "whoami": {
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      "Hash": "ef0f4d9b8f2cc2ebeccae1d725b8a023"
    },
    "withr": {
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      "Repository": "CRAN",
      "Hash": "ad03909b44677f930fa156d47d7a3aeb"
    },
    "writexl": {
      "Package": "writexl",
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      "Hash": "edd181b6e10c87497db16d1f8c0d4ed5"
    },
    "xfun": {
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      "Version": "0.24",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "88cdb9779a657ad80ad942245fffba31"
    },
    "xml2": {
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      "Repository": "CRAN",
      "Hash": "d4d71a75dd3ea9eb5fa28cc21f9585e2"
    },
    "xopen": {
      "Package": "xopen",
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      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "6c85f015dee9cc7710ddd20f86881f58"
    },
    "xtable": {
      "Package": "xtable",
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      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2"
    },
    "yaml": {
      "Package": "yaml",
      "Version": "2.2.1",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "2826c5d9efb0a88f657c7a679c7106db"
    },
    "zip": {
      "Package": "zip",
      "Version": "2.1.1",
      "Source": "Repository",
      "Repository": "CRAN",
      "Hash": "3bc8405c637d988801ec5ea88372d0c2"
    }
  }
}

targets: zobrazení pipeline

targets::tar_visnetwork()

## 
## Attaching package: ‘dplyr’
## 
## The following objects are masked from ‘package:stats’:
## 
##     filter, lag
## 
## The following objects are masked from ‘package:base’:
## 
##     intersect, setdiff, setequal, union
## 
## 
## Attaching package: ‘bslib’
## 
## The following object is masked from ‘package:utils’:
## 
##     page
## 
## Warning messages:
## 1: found matches() from tidyselect in a call to tar_load() or tar_read() in a knitr / R Markdown code chunk. These dependencies cannot be detected statically, so they will be ignored. 
## 2: found matches() from tidyselect in a call to tar_load() or tar_read() in a knitr / R Markdown code chunk. These dependencies cannot be detected statically, so they will be ignored. 
## 3: found matches() from tidyselect in a call to tar_load() or tar_read() in a knitr / R Markdown code chunk. These dependencies cannot be detected statically, so they will be ignored. 
## 4: found matches() from tidyselect in a call to tar_load() or tar_read() in a knitr / R Markdown code chunk. These dependencies cannot be detected statically, so they will be ignored.

Git

Repozitář online: https://github.com/petrbouchal/esifinancuji

Commit: 47dc90e686e44595d96b10f036aed4a3ab0cba3a